The external tissues of plants and animals are colonized by microbial communities termed microbiota. When organisms are exposed to environmental pollutants, these substances will therefore... Show moreThe external tissues of plants and animals are colonized by microbial communities termed microbiota. When organisms are exposed to environmental pollutants, these substances will therefore encounter microbiota at the exposure interface. Many antimicrobial substances have been found to disturb beneficial interactions between microbiota and the host, thereby impairing host health. Nanomaterials exhibit nanoscale properties that could affect host health in two additional, understudied, microbiota-dependent ways. Firstly, owing to their large surface area, adsorption interactions between nanomaterials, microbial metabolites and microbes could alter the identity and colloidal stability of nanomaterials, and may influence the dispersal of microbes. Secondly, the immuno-modulatory effects of microbiota could affect the sensitivity of hosts to immunotoxic nanomaterials. In this dissertation, we use a combination of computational techniques and zebrafish larvae experiments to unravel and quantify these interactions. We predict the affinity of microbial metabolites to carbon and metal nanomaterials, and show that titanium dioxide nanoparticles can affect the dispersal of microbes through aquatic ecosystems, and across different life stages of oviparous animals. Additionally, we provide insight into microbiota-dependent signaling pathways that affect the sensitivity of zebrafish larvae to particle-specific, immunotoxic effects of silver nanoparticles. Altogether, these results contribute to mechanistic pathways for microbiota-inclusive nanomaterial safety assessment. Show less
Ingested nanomaterials are exposed to many metabolites that are produced, modified, or regulated by members of the enteric microbiota. The adsorption of these metabolites potentially affects the... Show moreIngested nanomaterials are exposed to many metabolites that are produced, modified, or regulated by members of the enteric microbiota. The adsorption of these metabolites potentially affects the identity, fate, and biodistribution of nanomaterials passing the gastrointestinal tract. Here, we explore these interactions using in silico methods, focusing on a concise overview of 170 unique enteric microbial metabolites which we compiled from the literature. First, we construct quantitative structure–activity relationship (QSAR) models to predict their adsorption affinity to 13 metal nanomaterials, 5 carbon nanotubes, and 1 fullerene. The models could be applied to predict log k values for 60 metabolites and were particularly applicable to ‘phenolic, benzoyl and phenyl derivatives’, ‘tryptophan precursors and metabolites’, ‘short-chain fatty acids’, and ‘choline metabolites’. The correlations of these predictions to biological surface adsorption index descriptors indicated that hydrophobicity-driven interactions contribute most to the overall adsorption affinity, while hydrogen-bond interactions and polarity/polarizability-driven interactions differentiate the affinity to metal and carbon nanomaterials. Next, we use molecular dynamics (MD) simulations to obtain direct molecular information for a selection of vitamins that could not be assessed quantitatively using QSAR models. This showed how large and flexible metabolites can gain stability on the nanomaterial surface via conformational changes. Additionally, unconstrained MD simulations provided excellent support for the main interaction types identified by QSAR analysis. Combined, these results enable assessing the adsorption affinity for many enteric microbial metabolites quantitatively and support the qualitative assessment of an even larger set of complex and biologically relevant microbial metabolites to carbon and metal nanomaterials. Show less
This thesis focuses on the synthesis, characterization and performance towards CO2 electroreduction of mono and bi-metallic particles based on p-block metals. With an industrial perspective in mind... Show moreThis thesis focuses on the synthesis, characterization and performance towards CO2 electroreduction of mono and bi-metallic particles based on p-block metals. With an industrial perspective in mind, we try to synthesize particulate, high surface area materials with clean, scalable synthesis methods where possible and test their performance in H-Cell and gas diffusion electrode flow cell configurations. With a combination of characterization techniques, we find possible explanations for the catalytic behaviors. Show less
Similarity assessment is one of the means of optimally using scarcely available experimental data on the fate and hazards of nanoforms (NFs) for regulatory purposes. For a set of NFs that are shown... Show moreSimilarity assessment is one of the means of optimally using scarcely available experimental data on the fate and hazards of nanoforms (NFs) for regulatory purposes. For a set of NFs that are shown to be similar it is allowed in a regulatory context to apply the information available on any of the NFs within the group to the whole set of NFs. Obviously, a proper justification for such a similarity assessment is to be provided. Within the context of exemplifying such a justification, a case study was performed aimed at assessing the similarity of a set of spherical metallic NFs that different with regard to chemical composition (three metals) and particle size (three different sizes). The endpoints of assessment were root elongation and biomass increase of lettuce (Lactuca sativa L.) seedlings and exposure assessment was performed in order to express the actual exposure concentration in terms of time-weighted average particle concentrations. The results of the study show that for the specific endpoints assessed, chemical composition is driving NF toxicity and this is mostly due to impacts on the fate of the NFs. On the other hand, particle size of Cu NFs had a negligible impact on the dose-response relationships for the specific endpoints assessed. It is thus concluded that hazard data available on spherical Cu NF tested in our case can be used to inform on the hazards of any spherical Cu NF within the size range of 25–100 nm, but only applies for the certain endpoints. Also, toxicity data for the Cu2+-ion are suited for such a similarity assessment. Show less
In this work, we investigate the minute circular dichroism effects of single nanoparticles.To this aim, we apply photothermal imaging with a polarization-modulated heating beam. This new technique,... Show moreIn this work, we investigate the minute circular dichroism effects of single nanoparticles.To this aim, we apply photothermal imaging with a polarization-modulated heating beam. This new technique, which we call photothermal circular dichroism microscopy, probes circular dichroism in an absorption measurement, unlike other techniques which usually probe the extinction. We also investigate in detail how to avoid measurement artefacts such as leakage of linear dichroism and residual intensity modulation.We then study the CD of formally achiral and wet-chemically synthesized chiral nanoparticles. We find that the achiral spherical-like particles, can exhibit considerable circular dichroism, some of them display almost as strong CD as specially designed chiral particles. Furthermore, we find that the control of handedness of the synthesized chiral particles is only limited and that, even from a geometric perspective, the relation between the 3D shape of these particles and their handedness is not straightforward.In the last chapter, we apply our method to magnetic samples which exhibit circular dichroism through their magnetization but not due to their shape. The excellent sensitivity of photothermal microscopy not only allows us to perform magnetic imaging of particles, but we also succeeded in obtaining magnetization curves of single particles and estimating their magnetization. Show less
Particles are omnipresent in biopharmaceutical products. In protein-based therapeutics such particles are generally associated with impurities, either derived from the drug product itself (e.g.... Show moreParticles are omnipresent in biopharmaceutical products. In protein-based therapeutics such particles are generally associated with impurities, either derived from the drug product itself (e.g. protein aggregates), or from extrinsic contaminations (e.g. cellulose fibers). These impurities can affect product stability, as well as cause adverse effects once introduced into the human body. Particulate impurities are present over a wide range of sizes (from nanometers to millimeters) making them difficult to characterize by using a single method.Novel drug products may also contain particles that act as the active pharmaceutical ingredient (e.g., living cells) or a drug delivery vehicle (e.g., lipid nanoparticles). Unwanted immunotoxicity and inconsistent in vivo functionality can result from particle instability and aggregate formation. Therefore, the efficacy and safety of these therapeutics is dependent on the particle composition, quantity and size distribution.Consequently, well-established methods are required to quantify and characterize particles in the submicron- and micron-size ranges. In this thesis, we developed new approaches which allow for comprehensive characterization of the particle populations present in biopharmaceutical products, both as impurities or as API. Furthermore, the performed work focused on comparing different particle characterization techniques to allow a better understanding of the limitations and strengths of each method applied. Show less
In surface science there is great effort to move from studying simple, flat model surfaces in vacuum to investigating more complex model catalysts in gas environments (in situ). This thesis gives... Show moreIn surface science there is great effort to move from studying simple, flat model surfaces in vacuum to investigating more complex model catalysts in gas environments (in situ). This thesis gives three examples of such studies using microscopy and spectroscopy.Exposure of ZnO(10-10) to moderate pressures of water in an in situ scanning tunneling microscope reveals that the surface roughens. The flat ZnO(10-10) is thus only conditionally suited as a model catalyst for reactions involving water.In the same microscope, surface gold oxide formation is observed on TiO2/Au(111) during CO oxidation at 1 bar pressure. Comparisons to the Au(111) surface suggest that the titania does not supply atomic oxygen to the Au(111) substrate as part of the reaction mechanism of the CO oxidation.Co(0001) is investigated as a model catalyst for Fischer-Tropsch synthesis, the reaction of CO and H2 to form hydrocarbons. In this thesis the oxidation behavior of the cobalt and the adsorption of carbon species during the reaction are investigated using near-ambient pressure X-ray photoelectron spectroscopy.Generally, this thesis exemplifies the significant influence that small concentrations of contaminants in gases and materials can have on the structure and behavior of surfaces in in situ studies. Show less
The biological application of photoactivatable ruthenium anticancer prodrugs is limited by the need to use poorly penetrating high-energy visible light for their activation. Upconverting... Show moreThe biological application of photoactivatable ruthenium anticancer prodrugs is limited by the need to use poorly penetrating high-energy visible light for their activation. Upconverting nanoparticles (UCNPs), which produce high-energy light under near-infrared (NIR) excitation, can solve this issue, provided that they form stable, water (H2O)-dispersible nano-conjugates with the prodrug and that there is efficient energy transfer from the UCNP to the ruthenium complex. Herein, we report on the synthesis and photochemistry of the ruthenium(II) polypyridyl complex [Ru(bpy)(2)(3(H))](PF6)(2) ([1](PF6)(2)), where bpy = 2,2-bipyridine and 3(H) is a photocleavable bis(thioether) ligand modified with two phosphonate moieties. This ligand was coordinated to the ruthenium center through its thioether groups and could be dissociated under blue-light irradiation. Complex [1](PF6)(2) was bound to the surface of NaYF4:Yb3+,Tm3+@ NaYF4:Nd3+@NaYF4 core-shell-shell (CSS-)UCNPs through its bis(phosphonate) group, thereby creating a H2O-dispersible, thermally stable nanoconjugate (CSS-UCNP@[1]). Conjugation to the nanoparticle surface was found to be most efficient in neutral to slightly basic conditions, resulting in up to 2.4 x 10(3) Ru-II ions per UCNP. The incorporation of a neodymium-doped shell layer allowed for the generation of blue light using low-energy, deep-penetrating light (796 nm). This wavelength prevents the undesired heating seen with conventional UCNPs activated at 980 nm. Irradiation of CSS-UCNP@[1] with NIR light led to activation of the ruthenium complex [1](PF6)(2). Although only one of the two thioether groups was dissociated under irradiation at 50 W.cm(-2), we provide the first demonstration of the photoactivation of a ruthenium thioether complex using 796 nm irradiation of a H2O-dispersible nanoconjugate. Show less
Gold nanoparticles show surprisingly strong interactions with light in the visible range, which can be divided into scattering, absorption, and photoluminescence. When a nanoparticle absorbs light,... Show moreGold nanoparticles show surprisingly strong interactions with light in the visible range, which can be divided into scattering, absorption, and photoluminescence. When a nanoparticle absorbs light, the corresponding energy is converted to heat, which can affect the environment of the (hot) nanoparticle. This thesis uses scattering and photoluminescence to study the behaviour of optically heated single gold nanoparticles: it discusses the behaviour of single plasmonic vapour nanobubbles, which occur around highly heated nanoparticles immersed in a liquid, the detection of chirality in nano-objects through their absorption and the photothermal effect, the behaviour of gold nanoparticles under sub-picosecond pulsed excitation, and the temperature dependence of pulse-excited photoluminescence of such particles. Show less
This thesis aimed to investigate the impact of exposure dynamics, relative contributions of ENPs(particle) and ENPs(ion), and dosing regimens on the toxicity of ENPs varying in different physico... Show moreThis thesis aimed to investigate the impact of exposure dynamics, relative contributions of ENPs(particle) and ENPs(ion), and dosing regimens on the toxicity of ENPs varying in different physico-chemical properties, on the composition and functioning of soil microbial communities. The physico-chemical properties of ENPs could change their fate, and the exposure dynamics thus need to be taken into consideration for realistically characterizing the time-variable exposure in assessing toxicity. The metabolic profile of microbial community could change according to ENPs shapes, with nanoplates being more toxic than nanospheres and polygons. Regarding the microbial community composition, the effect of ENPs depended on exposure time and concentration. However, the alterations in community composition were not expressed in terms of community functioning, which indicates that genus specific changes occurred but not yet necessarily reflected biological significance with regard to community functioning. Functional redundancy might contribute to community tolerance to ENPs exposure. When exposed to more realistic ENPs exposure scenarios with multiple dosing frequencies instead of one-time injection, the repetitive exposure with low-dosing could induce a tendency towards larger alteration of both community composition and functioning. Our study thus provided further insights in understanding the impact of NPs on soil microbial communities towards environmentally relevant assessment. Show less
Cathodic corrosion is a relatively unknown phenomenon that can severely etch metallic electrodes at cathodic (negative) potentials. In spite of these remarkable changes that are caused by cathodic... Show moreCathodic corrosion is a relatively unknown phenomenon that can severely etch metallic electrodes at cathodic (negative) potentials. In spite of these remarkable changes that are caused by cathodic corrosion, the phenomenon is stil not fully understood. Cathodic corrosion is therefore the focus of this PhD thesis. The first three experimental chapters of the thesis focus on characterizing platinum, rhodium and gold electrodes before and after cathodic corrosion in a variety of working solutions. In doing so, these chapters establish surprisingly mild corrosion onset potentials and reveal an etching anistropy that depends on the cation in the working solution. Additional density functional theory calculations suggest a similarly significant role for adsorbed hydrogen. These result suggest the existence of ternary metal hydrides during cathodic corrosion. The role of hydrides is further studied in the fourth experimental chapter through X-ray absorption spectroscopy. These four fundamental chapters are followed by two more applied chapters. The first of these tailors the activity of a platinum single crystal towards oxygen reduction, by using cathodic corrosion. The second applied chapter uses cathodic corrosion to create and thoroughly characterize alloyed nanoparticles. Combined, these fundamental and applied chapters provide valuable new information towards understanding and applying cathodic corrosion. Show less
In summary, the collective results described in this thesis show that nanoparticulate vaccines can be delivered intradermally by coated and hollow microneedles and evoke antigen-specific immune... Show moreIn summary, the collective results described in this thesis show that nanoparticulate vaccines can be delivered intradermally by coated and hollow microneedles and evoke antigen-specific immune responses. The choice of both the nanoparticles and the microneedle(s) could have important influences on the immune responses. Microneedle arrays coated with antigen loaded and lipid bilayer fused mesoporous silica nanoparticles (MSNs) could be a promising system for convenient and fast intradermal delivery of protein antigen, although our results indicate that the system needs to be improved in order to obtain optimal immune responses. Moreover, antigen and adjuvant loaded nanoparticles can increase IgG2a (Th1) and CD8+ responses after intradermal delivery by hollow microneedles. This effect depends on the type and the physicochemical characteristics of the nanoparticles, in which smaller size and controlled release properties of antigen and adjuvant were found to correlate with the stronger effect. Finally, the combination of separate antigen loaded and adjuvant loaded nanoparticles may be as efficient as the antigen and adjuvant co-encapsulated nanoparticles for modification of the immune responses following intradermal immunization. Show less
Synthetic long peptides (SLP) derived from cancer-associated antigens hold great promise as well-defined antigens for cancer immunotherapy. Clinical studies showed that SLP vaccines have... Show more Synthetic long peptides (SLP) derived from cancer-associated antigens hold great promise as well-defined antigens for cancer immunotherapy. Clinical studies showed that SLP vaccines have functional potency when applied to pre-malignant stage patients, but need to be improved for use as a therapeutic intervention against tumours. So far, SLPs have been administered in Montanide ISA-51, a water-in-oil formulation with reported important drawbacks and induced local side effects. Therefore, there is an urgent need for replacement of Montanide by more potent and safe alternatives. In this thesis, the concept of cationic liposome-based formulations was introduced, as the backbone for improved delivery of SLPs for cancer therapeutic vaccination. The developed formulation’s ability to induce efficient immune responses able to control tumour outgrowth in aggressive independent tumour models, makes cationic liposomes a very promising platform for SLP-based cancer immunotherapy. Their flexibility regarding the properties of loaded SLPs, their relative inexpensive production and the possibility to administer them via different delivery routes are all in favour for liposomal SLP-based cancer immunotherapy to become reality soon. Show less
Synthetic long peptides (SLPs) derived from cancer antigens hold great promise as well-defined antigens for immunotherapy of cancer. However, the formulation of SLPs for in vivo administration... Show moreSynthetic long peptides (SLPs) derived from cancer antigens hold great promise as well-defined antigens for immunotherapy of cancer. However, the formulation of SLPs for in vivo administration still needs to be improved. So far, SLPs have been formulated in Montanide-based water-in-oil emulsions in (pre-)clinical trials. However, the use of Montanide as an adjuvant has some important limitations, such as: non-biodegradability; significant local side effects; poor control of release rate; lack of specific dentritic cell (DC)-activating capacity; and the presence of organic solvents (needed to dissolve the peptides prior to mixing with the adjuvant) in the final formulation. Therefore, alternative formulations containing an effective delivery system for peptide-based cancer vaccines are highly needed. Among the numerous vaccine delivery systems, poly(lactic-co-glycolic acid) (PLGA) biodegradable particulate delivery systems are particularly interesting because they are biocompatible; can protect soluble antigens from degradation and rapid clearance once administered; allow for co-encapsulation of (multiple) antigens and adjuvants; and mimic the size and structure of a pathogen, being more efficiently taken up by DCs than soluble antigen. This thesis describes fundamental studies on the design and applicability in a preclinical setting of PLGA-based particulate formulations for the delivery of SLP-based cancer vaccines. Show less
Our study emphasizes the importance of two toxicity-modifying factors (the composition of the surrounding exposure media and mixture effects) in the assessment of toxic effects of metals and... Show more Our study emphasizes the importance of two toxicity-modifying factors (the composition of the surrounding exposure media and mixture effects) in the assessment of toxic effects of metals and metal-based NPs on higher plants. Based on the affinity of metals for binding sites on the biotic ligand at the water-organism interface, the mechanistic models we developed provide better links with the toxicity of metal mixtures. We also recommend that finding a statistically significant deviation from additivity can be the starting point for further mechanistic research concerning toxicologically relevant interactions between substances, instead of the endpoint of research used so far. As an extension of the research discussed in the third chapter of this thesis, the commonly known model for the toxicity of mixtures was proven to be suitable for preliminarily assessing the effects of metal-based NPs on terrestrial organisms. The experimental design of nested combinations helps establish a more realistic exposure scenario for the environment and makes it possible to identify where and how chemical-chemical interactions occur with metal-based NPs. Consequently, our findings enrich the rapidly evolving field of toxicology regarding metals and metal-based NPs. Show less
Nanoparticles (NPs) exhibit special physicochemical properties compared to bulk particles. The difference in properties could, in principle, produce different effects on organisms. It is therefore... Show moreNanoparticles (NPs) exhibit special physicochemical properties compared to bulk particles. The difference in properties could, in principle, produce different effects on organisms. It is therefore important to determine the relationship between the physicochemical characteristics of NPs and their toxicity profile, by means of experimental testing. Experimental toxicity testing data can also be used to find the best dose metric for the responses induced by NPs, which was the purpose of the research presented in this thesis. Furthermore, this thesis aims to move forward from toxicity testing primarily in animal models to computational dose metric modeling. Show less
Nature__s own building block, peptide/protein derived materials have been of great interest for supramolecular chemists. The amino acids in peptides/proteins are linked via amide bonds, which makes... Show moreNature__s own building block, peptide/protein derived materials have been of great interest for supramolecular chemists. The amino acids in peptides/proteins are linked via amide bonds, which makes them more stable against degradation as compared to other natural materials such as oligonucleotides. Peptides adopt a secondary structure which is determined by their amino acid sequence resulting in a structure with a specific fold like a beta sheet, a helix or a random coil conformation.These secondary structures can govern the supra-molecular structure of the macromolecule to achieve specific function. Peptides can be short, such as dipeptides or as long as a small protein, which are able to selfassemble into a designed nanostructure and thus providing a wide choice of biomaterials for a chemical biologist. In last decade, peptides have been shown to have great versatility and inherent high affinity for their target to carry out various functions which is the scope of this thesis presented here. Show less
Catalysis is the working horse of the chemical industry. In many cases, it is a poorly understood process taking place at the surfaces of nanoparticles under relatively harsh conditions, such as... Show moreCatalysis is the working horse of the chemical industry. In many cases, it is a poorly understood process taking place at the surfaces of nanoparticles under relatively harsh conditions, such as high pressures and high temperatures. This thesis focuses on new approaches to acquire atomic-scale information on catalytic processes on metal nanoparticles in high-pressure, high-temperature conditions. This thesis starts with a comprehensive approach to the development of novel instruments and methods for in-situ experiments on model catalysts under working conditions. We introduce the ReactorAFM, the world’s first high-pressure, high-temperature non-contact Atomic Force Microscope, and two software packages for data analysis. Next, we have applied several in-situ measurement techniques to study catalytic model systems at atmospheric pressures and elevated temperatures. We describe a study of the interaction of gas mixtures of nitric oxide and hydrogen on the Pt(110) surface, using surface X-ray diffraction. In the next chapter, we used similar mixtures but with a Pt nanoparticle model catalyst in a high-pressure reaction cell in a transmission electron microscope. Lastly, we have applied four in-situ techniques, including our new ReactorAFM, to investigate the role of thin oxide shells in spontaneous reaction oscillations on Pd nanoparticles during the catalytic oxidation of carbon monoxide Show less
