It has been a long-standing mystery how complex biological structures emerge from such seemingly uncoordinated building blocks as cells and tissues, in the presence of only minimal environmental... Show moreIt has been a long-standing mystery how complex biological structures emerge from such seemingly uncoordinated building blocks as cells and tissues, in the presence of only minimal environmental guidance. In particular, unifying descriptions independent of microscopic details of a specific organism are rare. In recent years, hydrodynamics has successfully been applied to describe certain types living systems. The thesis is concerned with understanding different aspects of structure formation in active liquids and biological systems. In the first chapter we investigate the coarsening dynamics in the Toner-Tu theory and compare it with an experimental colloidal system. Afterwards, we investigate the effect of chirality in active nematics, with applications to biological tissues. In the last part we derive and study a model to explain geometric deformations due to the presence of activity. The resulting dynamics might be able to explain morphogenetic processes. Show less
In this thesis we aimed to get insight in how the methylome is established during development and subsequently degenerates during ageing using an integrative approach to the analysis of DNA... Show moreIn this thesis we aimed to get insight in how the methylome is established during development and subsequently degenerates during ageing using an integrative approach to the analysis of DNA methylation in conjunction with other levels of genomics data. The first two empirical chapters of this thesis describe the establishment and the maintenance of the epigenome during fetal development and in later life in multiple tissues. In the subsequent two chapters we investigated the loss of control over the methylome in blood and other tissues. Show less