Context. Over the last few years, the chemistry of molecules other than CO in the planet-forming zones of disks is starting to be explored with Spitzer and high-resolution ground-based data.... Show moreContext. Over the last few years, the chemistry of molecules other than CO in the planet-forming zones of disks is starting to be explored with Spitzer and high-resolution ground-based data. However, these studies have focused only on a few simple molecules. Aims: The aim of this study is to put observational constraints on the presence of more complex organic and sulfur-bearing molecules predicted to be abundant in chemical models of disks and to simulate high resolution spectra in view of future missions. Methods: High signal-to-noise ratio (S/N) Spitzer spectra of the near edge-on disks IRS 46 and GV Tau are used to search for mid-infrared absorption bands of various molecules. These disks are good laboratories because absorption studies do not suffer from low line/continuum ratios that plague emission data. Simple local thermodynamic equilibrium (LTE) slab models are used to infer column densities (or upper limits) and excitation temperatures. Results: Mid-infrared bands of HCN, C$_{2}$H$_{2}$ and CO$_{2}$ are clearly detected toward both sources. The HCN and C$_{2}$H$_{2}$ absorption arises in warm gas with excitation temperatures of 400-700 K, whereas the CO$_{2}$ absorption originates in cooler gas of ~{}250 K. Column densities and their ratios are comparable for the two sources. No other absorption features are detected at the 3{$σ$} level. Column density limits of the majority of molecules predicted to be abundant in the inner disk - C$_{2}$H$_{4}$, C$_{2}$H$_{6}$, C$_{6}$H$_{6}$, C$_{3}$H$_{4}$, C$_{4}$H$_{2}$, CH$_{3}$, HNC, HC$_{3}$N, CH$_{3}$CN, NH$_{3}$ and SO$_{2}$ - are determined and compared with disk models. Conclusions: The inferred abundance ratios and limits with respect to C$_{2}$H$_{2}$ and HCN are roughly consistent with models of the chemistry in high temperature gas. Models of UV irradiated disk surfaces generally agree better with the data than pure X-ray models. The limit on NH$_{3}$/HCN implies that evaporation of NH$_{3}$-containing ices is only a minor contributor. The inferred abundances and their limits also compare well with those found in comets, suggesting that part of the cometary material may derive from warm inner disk gas. The high resolution simulations show that future instruments on the James Webb Space Telescope (JWST), the Extremely Large Telescopes (ELTs), the Stratospheric Observatory for Infrared Astronomy (SOFIA) and the Space Infrared Telescope for Cosmology and Astrophysics (SPICA) can probe up to an order of magnitude lower abundance ratios and put important new constraints on the models, especially if pushed to high S/Ns. Appendices are available in electronic form at http://www.aanda.orgShow less
Chemistry plays an important role in the study of the physics and evolution of the warm dense Interstellar Medium (ISM). This is found in very different environment, e.g. in the disks around low... Show moreChemistry plays an important role in the study of the physics and evolution of the warm dense Interstellar Medium (ISM). This is found in very different environment, e.g. in the disks around low-mass young stellar objects (YSOs), in the envelopes of massive-YSOs, and in the nuclei of Ultra Luminous Infrared Galaxies (ULIRGS). The excitation temperatures and abundances of the observed molecules provide the observer with a physicochemical snapshot of the regions. The abundances of the molecules depend strongly on temperature, density, radiation field (UV, Infrared, and X-ray) and initial composition of the gas. Infrared spectroscopy is instrumental in the study of dense ISM as many species have transitions in the infrared. Space based instruments, unhindered by the earth atmosphere, allow us to study these. The absorption and emission features are often weak. Therefore a major challenge in using these instruments is to understand the instrumental characteristics and translating that knowledge into usable reduction algorithms. Most of the data used in this thesis are obtained with space based spectrographs, ISO-SWS and Spitzer-IRS, pushing them to their limits. Show less
