The amyloid β (A β) peptide is important in the context of Alzheimer's disease, since it is one of the major components of the fibrils that constitute amyloid plaques. Agents that can influence... Show moreThe amyloid β (A β) peptide is important in the context of Alzheimer's disease, since it is one of the major components of the fibrils that constitute amyloid plaques. Agents that can influence fibril formation are important, and of those, membrane mimics are particularly relevant, because the hydrophobic part of A β suggests a possible membrane activity of the peptide. We employed spin-label EPR to investigate the aggregation process of A β1-40 in the presence of the sodium dodecyl sulfate (SDS) detergent as a membrane-mimicking agent. In this work, the effect of SDS on A β is studied using two positions of spin label, the N-terminus and position 26. By comparing the two label positions, the effect of local mobility of the spin label is eliminated, revealing A β aggregation in the SDS concentration regime below the critical micelle concentration (CMC). We demonstrate that, at low SDS concentrations, the N-terminus of A β participates in the solubilization, most likely by being located at the particle-water interface. At higher SDS concentrations, an SDS-solubilized state that is a precursor to the one A β/micelle state above the CMC of SDS prevails. We propose that A β is membrane active and that aggregates include SDS. This study reveals the unique potential of EPR in studying A β aggregation in the presence of detergent. Show less
Proteins are essential for organisms and participate in virtually every process within cells. Knowledge about the structure of proteins provides crucial information about their function in... Show moreProteins are essential for organisms and participate in virtually every process within cells. Knowledge about the structure of proteins provides crucial information about their function in biological mechanisms. In determining the structure of proteins with biophysical approaches, electron paramagnetic resonance (EPR) is rapidly gaining ground. The aim of this thesis is to provide insight in how broad the application of EPR can be to study proteins, in particular those which are difficult if not impossible to study with other approaches. The focus of this thesis is to investigate the aggregation and misfolding of intrinsically disordered proteins and to determine the structure of disordered parts of proteins with EPR. Specifically, the amyloid β (Aβ) peptide, the α-synuclein (αS) protein, and the light-harvesting protein CP29 are studied. Show less
Scanu, S.; Förster, J.; Finiguerra, M.G.; Hashemi Shabestari, M.; Huber, M.I.; Ubbink, M. 2012
