Background Previous phylogeographic studies of the lion (Panthera leo) have improved our insight into the distribution of genetic variation, as well as a revised taxonomy which now recognizes a... Show moreBackground Previous phylogeographic studies of the lion (Panthera leo) have improved our insight into the distribution of genetic variation, as well as a revised taxonomy which now recognizes a northern (Panthera leo leo) and a southern (Panthera leo melanochaita) subspecies. However, existing whole range phylogeographic studies on lions either consist of very limited numbers of samples, or are focused on mitochondrial DNA and/or a limited set of microsatellites. The geographic extent of genetic lineages and their phylogenetic relationships remain uncertain, clouded by massive sampling gaps, sex-biased dispersal and incomplete lineage sorting. Results In this study we present results of low depth whole genome sequencing and subsequent variant calling in ten lions sampled throughout the geographic range, resulting in the discovery of >150,000 Single Nucleotide Polymorphisms (SNPs). Phylogenetic analyses revealed the same basal split between northern and southern populations, as well as four population clusters on a more local scale. Further, we designed a SNP panel, including 125 autosomal and 14 mitochondrial SNPs, which was tested on >200 lions from across their range. Results allow us to assign individuals to one of these four major clades (West & Central Africa, India, East Africa, or Southern Africa) and delineate these clades in more detail. Conclusions The results presented here, particularly the validated SNP panel, have important applications, not only for studying populations on a local geographic scale, but also for tracing samples of unknown origin for forensic purposes, and for guiding conservation management of ex situ populations. Thus, these genomic resources not only contribute to our understanding of the evolutionary history of the lion, but may also play a crucial role in conservation efforts aimed at protecting the species in its full diversity. Show less
Bertola, L.D.; Vermaat, M.; Lesilau, F.; Chege, M.; Tumenta, P.N.; Sogbohossou, E.A.; ... ; Vrieling, K. 2022
Background Previous phylogeographic studies of the lion (Panthera leo) have improved our insight into the distribution of genetic variation, as well as a revised taxonomy which now recognizes a... Show moreBackground Previous phylogeographic studies of the lion (Panthera leo) have improved our insight into the distribution of genetic variation, as well as a revised taxonomy which now recognizes a northern (Panthera leo leo) and a southern (Panthera leo melanochaita) subspecies. However, existing whole range phylogeographic studies on lions either consist of very limited numbers of samples, or are focused on mitochondrial DNA and/or a limited set of microsatellites. The geographic extent of genetic lineages and their phylogenetic relationships remain uncertain, clouded by massive sampling gaps, sex-biased dispersal and incomplete lineage sorting. Results In this study we present results of low depth whole genome sequencing and subsequent variant calling in ten lions sampled throughout the geographic range, resulting in the discovery of >150,000 Single Nucleotide Polymorphisms (SNPs). Phylogenetic analyses revealed the same basal split between northern and southern populations, as well as four population clusters on a more local scale. Further, we designed a SNP panel, including 125 autosomal and 14 mitochondrial SNPs, which was tested on >200 lions from across their range. Results allow us to assign individuals to one of these four major clades (West & Central Africa, India, East Africa, or Southern Africa) and delineate these clades in more detail. Conclusions The results presented here, particularly the validated SNP panel, have important applications, not only for studying populations on a local geographic scale, but also for tracing samples of unknown origin for forensic purposes, and for guiding conservation management of ex situ populations. Thus, these genomic resources not only contribute to our understanding of the evolutionary history of the lion, but may also play a crucial role in conservation efforts aimed at protecting the species in its full diversity. Show less
Large carnivore populations have suffered declines worldwide. For the African continent, these have been particularlystrong in West and Central Africa. The Bénoué Complex in North Cameroon, located... Show moreLarge carnivore populations have suffered declines worldwide. For the African continent, these have been particularlystrong in West and Central Africa. The Bénoué Complex in North Cameroon, located in Central Africa, is a keylandscape for their conservation. We determined spatiotemporal trends in lion (Panthera leo), leopard (Panthera pardus)and spotted hyaena (Crocuta crocuta) abundance, using repeated spoor counts on transects from 2007 to 2015. Resultsof the temporal analysis indicate that lion and spotted hyaena abundance reduced over time across the complex, whereasleopards only declined in the last 2 years and primarily in the Faro Block. From the spatial analysis, it became clearspoor abundances differ between areas within the Bénoué Complex and between management types: Spoor densitieswere especially higher in Bouba Ndjida National Park and the hunting zones around Faro. This effect is most probablyrelated to a more effective management strategy in these areas. Our fine-scale long-term monitoring technique provides alow-cost, easy to implement, multi-scale and effective tool for the identification of both regional and range-widecarnivore conservation hotspots. Show less
We report densities of spotted hyaena (Crocuta crocuta) and African golden wolf (Canis anthus) in Enderta district in northern Ethiopia with high human and low natural prey densities. We estimated... Show moreWe report densities of spotted hyaena (Crocuta crocuta) and African golden wolf (Canis anthus) in Enderta district in northern Ethiopia with high human and low natural prey densities. We estimated spotted hyaena and African golden wolf abundance and characterized their spatial distribution with three methods we surveyed four road-transects for 66 nights during dry (n = 41) and wet (n = 25) seasons, we used 34 calling stations and we mapped all active spotted hyaena dens at the time of the survey. The density of spotted hyaena and African golden wolf increased with proximity to towns where human density was higher. A total of 562 spotted hyaena and 63 African golden wolf responded to calling stations, leading to estimates of 1145 spotted hyaena and 166 African golden wolf in Enderta district. This method also found a significantly higher spotted hyaena and African golden wolf abundance in high human density areas. Maximum response radius was 2.8 km for spotted hyaena and 2.5 km for African golden wolf, and response probability was 0.83 for spotted hyaena and 0.8 for African golden wolf, respectively. We found 40 active spotted hyaena dens with 1507 remnants of prey, and the majority of the dens were located close to rivers and villages. Our findings show a positive relationship between spotted hyaena, African golden wolf and human concentrations that might demonstrate a case of exceptional coexistence of humans and carnivores, both at high densities. We suggest further investigations into co-adaptations between humans and predators in the study area. Show less
Bertola, L.D.; Jongbloed, H.; Gaag, K.J. van der; Kniff, P. de; Yamaguchi, N.; Hooghiermstra, H.; ... ; Iongh, H.H. de 2016
People who perceive economic benefits and enjoy unrestricted access to natural resources tend to support ecosystem conservation efforts. Our study explores whether this remains true in remnant... Show morePeople who perceive economic benefits and enjoy unrestricted access to natural resources tend to support ecosystem conservation efforts. Our study explores whether this remains true in remnant patches of Afroalpine ecosystem in North Ethiopia, where communal land provides valuable natural resources for the local communities and also sustain small populations of the endangered Ethiopian wolf (Canis simensis). Questionnaires were designed to assess ecological and socio-economic characteristics of the livelihoods of the Amhara people living in Mount Abune Yosef and their attitudes toward Afroalpine and Ethiopian wolf conservation. Of the 120 households interviewed, selected randomly from across eight villages, 80 % benefited from natural resources by grazing their livestock and harvesting firewood and grasses. The majority (90 %) also suffered from livestock predation by Ethiopian wolves and common jackals (Canis aureus) and crop raiding by geladas (Theropithecus gelada), birds, and rodents, yet more than half reported a positive attitudes toward Ethiopian wolves (66 %). People with positive attitudes tended to live close to the communal land, to own more livestock, and to be unaffected by conflict. Many also recognized the need to protect the Afroalpine habitats of Abune Yosef (71 %), and this attitude predominated among the literate, households that owned land, had smaller herds and were further away. We discussed how people's attitudes were modulated by human-wildlife conflicts and by the benefits derived from the access to natural resources in communal land, and the implications for the conservation of Afroalpine ecosystem and the flagship Ethiopian wolf. Show less
Context: Livestock depredation and scavenging of waste by the spotted hyena (Crocuta crocuta) occurs widely across Ethiopia. Aims: The aim of this study was to investigate the food base of the... Show moreContext: Livestock depredation and scavenging of waste by the spotted hyena (Crocuta crocuta) occurs widely across Ethiopia. Aims: The aim of this study was to investigate the food base of the spotted hyena and livestock depredation across Ethiopia. Methods: The diet of spotted hyenas was assessed in 17 randomly selected study sites across the country, including two national parks, by scat analysis. We conducted an extensive survey of livestock depredation and economic impact in 10 randomly selected subdistricts using semistructured interviews with 3080 randomly selected households. Key results: We found that even spotted hyenas from national parks feed predominantly on anthropogenic waste. Households reported losses of 2230 domestic animals, 3.9% of their stock or an average annual financial loss of US$10.3 per household over the past five years. The diet of spotted hyenas showed only prey items of domestic origin except in Chebera Churchura National Park, where a few items of prey of wild species were found. Frequencies of prey remains of cattle, sheep, donkey and goat were highest in decreasing order. Key conclusions: Survival of hyenas in Ethiopia is thus largely and widely dependent on management of livestock conflict and waste. Some hairs in scats originated from depredation, but most food intake is from waste dumps and slaughterhouses. Implications: Waste management, spotted hyena persistence and environmental sanitation area are linked. Show less
In this study, we were interested in understanding if droughts influence the home range of predators such as lions, and if it does, in what ways the droughts influenced lions to adjust their home... Show moreIn this study, we were interested in understanding if droughts influence the home range of predators such as lions, and if it does, in what ways the droughts influenced lions to adjust their home range, in response to prey availability. We monitored movements of ten lions fitted with GPS-GSM collars in order to analyze their home range and movement patterns over a six year period (2007-2012). We assessed the impact of a severe drought on the lion home range and movement patterns in the Amboseli ecosystem. There was a strong positive correlation between the home range size and distance moved in 24 h before and during the drought (2007-2009), while after the drought there was a significant negative correlation. A weak positive correlation was evident between the lion home range and rainfall amounts (2010-2012). The male and female home ranges varied over the study period. The home range size and movement patterns coincided with permanent swamps and areas of high prey density inside the protected area. Over the course of the dry season and following the drought, the ranges initially shrank and then expanded in response to decreasing prey densities. The lions spent considerable time outside the park boundaries, particularly after severe the drought. We conclude that under conditions of fragmented habitats, severe climate conditions create new challenges for lion conservation due to effects on prey availability and subsequent influences on carnivore species ranging patterns. Stochastic weather patterns can force wide-ranging species beyond current reserve boundaries, into areas where there will be greater conflicts with humans. Show less
Lion populations have undergone a severe decline in West Africa. As baseline for conservation management, we assessed the group structure of lions in the Pendjari Biosphere Reserve in Benin. This... Show moreLion populations have undergone a severe decline in West Africa. As baseline for conservation management, we assessed the group structure of lions in the Pendjari Biosphere Reserve in Benin. This reserve, composed of one National Park and two Hunting Zones, is part of the WAP transboundary complex of protected areas. Overall mean group size was 2.661.7 individuals (n = 296), it was significantly higher in the National Park (2.761.7, n = 168) than in the Hunting Zones (2.261.5, n = 128). Overall adult sex ratio was even, but significantly biased towards females (0.67) in the National Park and towards males (1.67) in the Hunting Zones. Our results suggest that the Pendjari lion population is affected by perturbations, such as trophy hunting. Show less
Yirga, G.; Bauer, H.; Gebrehiwot, K.; Deckers, J. 2011
