The cell membrane acts as a barrier that controls the passage of substances from the outside to the inside of a cell. It is composed of various lipids organized in a bilayer with proteins embedded.... Show moreThe cell membrane acts as a barrier that controls the passage of substances from the outside to the inside of a cell. It is composed of various lipids organized in a bilayer with proteins embedded. Experimental data suggested that lipids are organized in nanometer-sized structures called membrane domains. I study the existence and the role of domains in living cells through single-molecule fluorescence microscopy. This technique allows pinpointing the position of each molecule with high spatial accuracy. I apply it to study the distribution of a membrane-anchored protein, HRas, in the inner leaflet of the membrane. From the single-molecule positions a map of protein distribution is reconstructed. Statistical analysis revealed dynamic partitioning in membrane domains. A different approach relies on tracking single proteins diffusion in the membrane. With this method I studied the influence of domains in the assembly of a two-component receptor, type I interferon receptor. I observed confinements of the components in small domains, which makes assembly faster and more efficient. Further, I present an advanced technique, to track proteins at microsecond time scale. After validating the technique on DNA, I applied it to GPI-anchor protein diffusion. These data confirmed the existence of theoretically proposed, complex diffusive modes. Show less
Chemotaxis, the process in which cells detect a concentration gradient of a specific substance, interpret that information, and subsequently initiate movement towards the source is an essential... Show moreChemotaxis, the process in which cells detect a concentration gradient of a specific substance, interpret that information, and subsequently initiate movement towards the source is an essential part of many biological phenomena. It___s central to the processes in wound healing, in immune defense and in the formation of a viable embryo. In this thesis I used the well characterized social amoeba Dictyostelium discoideum to investigate, in depth, the dynamics that govern the first steps in the detection of a chemical gradient. D. discoideum detects cyclic adenosine mono-phosphate (cAMP) by a special receptor protein, cAMP receptor 1 (cAR1). Inside the cell this receptor activates a G protein which subsequently initiates a complex signaling cascade. Using fluorescence single-molecule microscopy I investigated the movements of both cAR1 and its associated G protein. During chemotaxis both proteins show striking differences in mobility between the leading and trailing edge of the cell. Those differences are presumably key to our understanding of gradient sensing by cells that have been ignored in models so far. Show less
A human consists of billions of cells. All these cells need to know in which organ they are located and what their position inside the organ is. One way to obtain this information is via morphogens... Show moreA human consists of billions of cells. All these cells need to know in which organ they are located and what their position inside the organ is. One way to obtain this information is via morphogens, small particles providing positional information. We quantitatively studied the transport of the morphogen Decapentaplegic (Dpp) in the __wing imaginal disc__ (the precursor of the wing) of fruit fly larvae. Certain cells in this disc produce Dpp, while others receive it and determine their position according to the Dpp concentration. To study Dpp transport we first developed a microscope able to follow single molecules in three dimensions in living tissue with high spatial and temporal accuracy. With this microscope we then studied the subcellular processes governing intracellular Dpp transport. We determined how long Dpp resides in different types of endosomes (a cellular compartment involved in transport). We also found that the movement of endosomes is too small to facilitate Dpp transport. Furthermore we found differences in the in- and outflow of Dpp in endosomes. This work is one of the first to quantitatively study intracellular morphogen transport. It provides new insights into growth and development of organisms. Show less
This thesis describes an STM study of the creation, diffusion and annihilation of missing atoms, so-called surface vacancies, in the Cu(100) surface. Because of the extremely high mobility of... Show moreThis thesis describes an STM study of the creation, diffusion and annihilation of missing atoms, so-called surface vacancies, in the Cu(100) surface. Because of the extremely high mobility of surface vacancies in combination with their extremely low density, we have been forced to use tracer particles, in form of indium atoms incorporated in the topmost copper layer, in order to investigate the behavior of the surface vacancies. In this study we have employed tailor-made geometries in the copper surface, in which indium atoms were surrounded exclusively by upward or by downward terrace ledges. Our STM movies show a striking difference between these two cases, with differences in jump frequencies and average jump lengths of more than one order of magnitude. This allowed us to determine that surface vacancies are primarily created and annihilated at the upper side of terrace ledges, which can be formulated, in analogy with the energetics of ad-atoms, in terms of an Ehrlich-Schwoebel barrier for surface vacancies. Dedicated low-temperature measurements, where surface vacancies have been artificially created, have directly revealed the diffusion characteristics of individual surface vacancies. These measurements allow us to construct the complete energy landscape for the birth, life and death of surface vacancies in Cu(100). Show less
