A blood-based signature of cerebrospinal fluid A beta(1-42) status

Goudey, B.; Fung, B.J.; Schieber, C.; Faux, N.G.; Weiner, M.W.; Aisen, P.; ... ; Plassman, B. (2019)

Article / Letter to editor

It is increasingly recognized that Alzheimer’s disease (AD) exists before dementia is present and that shifts in amyloid beta occur long before clinical symptoms can be detected. Early detection of these molecular changes is a key aspect for the success of interventions aimed at slowing down rates of cognitive decline. Recent evidence indicates that of the two established methods for measuring amyloid, a decrease in cerebrospinal fluid (CSF) amyloid β₁₋₄₂ (Aβ₁₋₄₂) may be an earlier indicator of Alzheimer’s disease risk than measures of amyloid obtained from Positron Emission Tomography (PET). However, CSF collection is highly invasive and expensive. In contrast, blood collection is routinely performed, minimally invasive and cheap. In this work, we develop a blood-based signature that can provide a cheap and minimally invasive estimation of an individual’s CSF amyloid status using a machine learning approach. We show that a Random Forest model derived from plasma analytes can accurately predict subjects as having abnormal (low) CSF Aβ₁₋₄₂ levels indicative of AD risk (0.84 AUC, 0.78 sensitivity, and 0.73 specificity). Refinement of the modeling indicates that only APOEε4 carrier status and four plasma analytes (CGA, Aβ₁₋₄₂, Eotaxin 3, APOE) are required to achieve a high level of accuracy. Furthermore, we show across an independent validation cohort that individuals with predicted abnormal CSF Aβ₁₋₄₂ levels transitioned to an AD diagnosis over 120 months significantly faster than those with predicted normal CSF Aβ₁₋₄₂ levels and that the resulting model also validates reasonably across PET Aβ₁₋₄₂ status (0.78 AUC). This is the first study to show that a machine learning approach, using plasma protein levels, age and APOEε4 carrier status, is able to predict CSF Aβ₁₋₄₂ status, the earliest risk indicator for AD, with high accuracy.

• All authors: Goudey, B.; Fung, B.J.; Schieber, C.; Faux, N.G.; Weiner, M.W.; Aisen, P.; Petersen, R.; Jack, C.R.; Jagust, W.; Trojanowki, J.Q.; Toga, A.W.; Beckett, L.; Green, R.C.; Saykin, A.J.; Morris, J.; Shaw, L.M.; Kaye, J.; Quinn, J.; Silbert, L.; Lind, B.; Carter, R.; Dolen, S.; Schneider, L.S.; Pawluczyk, S.; Beccera, M.; Teodoro, L.; Spann, B.M.; Brewer, J.; Vanderswag, H.; Fleisher, A.; Heidebrink, J.L.; Lord, J.L.; Mason, S.S.; Albers, C.S.; Knopman, D.; Johnson, K.; Doody, R.S.; Villanueva-Meyer, J.; Chowdhury, M.; Rountree, S.; Dang, M.; Stern, Y.; Honig, L.S.; Bell, K.L.; Ances, B.; Morris, J.C.; Carroll, M.; Creech, M.L.; Franklin, E.; Mintun, M.A.; Schneider, S.; Oliver, A.; Marson, D.; Griffth, R.; Clark, D.; Geldmacher, D.; Brockington, J.; Roberson, E.; Natelson Love, M.; Grossman, H.; Mitsis, E.; Shah, R.C.; deToledo-Morrell, L.; Duara, R.; Varon, D.; Greig, M.T.; Roberts, P.; Albert, M.; Onyike, C.; D'Agostino, D.; Kielb, S.; Galvin, J.E.; Cerbone, B.; Michel, C.A.; Pogorelec, D.M.; Rusinek, H.; Leon, M.J. de; Glodzik, L.; De Santi, S.; Doraiswamy, P.M.; Petrella, J.R.; Borges-Neto, S.; Wong, T.Z.; Coleman, E.; Smith, C.D.; Jicha, G.; Hardy, P.; Sinha, P.; Oates, E.; Conrad, G.; Porsteinsson, A.P.; Goldstein, B.S.; Martin, K.; Makino, K.M.; Ismail, M.S.; Brand, C.; Mulnard, R.A.; Thai, G.; McAdams-Ortiz, C.; Womack, K.; Mathews, D.; Quiceno, M.; Levey, A.I.; Lah, J.J.; Cellar, J.S.; Burns, J.M.; Swerdlow, R.H.; Brooks, W.M.; Apostolova, L.; Tingus, K.; Woo, E.; Silverman, D.H.S.; Lu, P.H.; Bartzokis, G.; Graff-Radford, N.R.; Parftt, F.; Kendall, T.; Johnson, H.; Farlow, M.R.; Hake, A.M.; Matthews, B.R.; Brosch, J.R.; Herring, S.; Hunt, C.; Dyck, .H. van; Carson, R.E.; MacAvoy, M.G.; Varma, P.; Chertkow, H.; Bergman, H.; Hosein, C.; Black, S.; Stefanovic, B.; Caldwell, C.; Hsiung, Ging-Yuek Robin; Feldman, H.; Mudge, B.; Assaly, M.; Finger, E.; Pasternack, S.; Rachisky, I.; Trost, D.; Kertesz, A.; Bernick, C.; Munic, D.; Mesulam, M.-M.; Lipowski, K.; Weintraub, S.; Bonakdarpour, B.; Kerwin, D.; Wu, C.-K.; Johnson, N.; Sadowsky, C.; Villena, T.; Turner, R.S.; Reynolds, B.; Sperling, R.A.; Johnson, K.A.; Marshall, G.; Yesavage, J.; Taylor, J.L.; Lane, B.; Rosen, A.; Tinklenberg, J.; Sabbagh, M.N.; Belden, C.M.; Jacobson, S.A.; Sirrel, S.A.; Kowall, N.; Killiany, R.; Budson, A.E.; Norbash, A.; Johnson, P.L.; Obisesan, T.O.; Wolday, S.; Allard, J.; Lerner, A.; Ogrocki, P.; Tatsuoka, C.; Fatica, P.; Fletcher, E.; Maillard, P.; Olichney, J.; DeCarli, C.; Carmichael, O.; Kittur, S.; Borrie, M.; Lee, T.-Y.; Bartha, R.; Johnson, S.; Asthana, S.; Carlsson, C.M.; Potkin, S.G.; Preda, A.; Nguyen, D.; Tariot, P.; Burke, A.; Trncic, N.; Reeder, S.; Bates, V.; Capote, H.; Rainka, M.; Scharre, D.W.; Kataki, M.; Adeli, A.; Zimmerman, E.A.; Celmins, D.; Brown, A.D.; Pearlson, G.D.; Blank, K.; Anderson, K.; Flashman, L.A.; Seltzer, M.; Hynes, M.L.; Santulli, R.B.; Sink, K.M.; Gordineer, L.; Williamson, J.D.; Garg, P.; Watkins, F.; Ott, B.R.; Querfurth, H.; Tremont, G.; Salloway, S.; Malloy, P.; Correia, S.; Rosen, H.J.; Miller, B.L.; Perry, D.; Mintzer, J.; Spicer, K.; Bachman, D.; Pomara, N.; Hernando, R.; Sarrael, A.; Relkin, N.; Chaing, G.; Lin, M.; Ravdin, L.; Smith, A.; Raj, B.A.; Fargher, K.; Saykin, A.; Nho, K.; Kling, M.; Toledo, J.; Shaw, L.; Trojanowski, J.; Farrer, L.; Kastsenmueller, G.; Arnold, M.; Wishart, D.; Wurtz, P.; Bhattcharyya, S.; Duijin, C. van; Mangravite, L.; Han, X.; Hankemeier, T.; Fiehn, O.; Barupal, D.; Thiele, I.; Heinken, A.; Meikle, P.; Price, N.; Funk, C.; Jia, W.; Kueider-Paisley, A.; Tenebaum, J.; Black, C.; Moseley, A.; Thompson, W.; Mahmoudiandehkorki, S.; Baillie, R.; Welsh-Bohmer, K.; Plassman, B.
• Date: 2019-03-11
• Journal: Scientific Reports
• Volume: 9
• Pages: 4163
• DOI: doi:10.1038/s41598-018-37149-7