Neuromuscular disease genetics in under-represented populations: increasing data diversity

Wilson, L.A.; Macken, W.L.; Perry, L.D.; Record, C.J.; Schon, K.R.; Frezatti, R.S.S.; Raga, S.; Naidu, K.; Köken, Ö.Y.; Polat, I.; Kapapa, M.M.; Dominik, N.; Efthymiou, S.; Morsy, H.; Nel, M.; Fassad, M.R.; Gao, F.; Patel, K.; Schoonen, M.; Bisschoff, M.; Vorster, A.; Jonvik, H.; Human, R.; Lubbe, E.; Nonyane, M.; Vengalil, S.; Nashi, S.; Srivastava, K.; Lemmers, R.J.L.F.; Reyaz, A.; Mishra, R.; Töpf, A.; Trainor, C.I.; Steyn, E.C.; Mahungu, A.C.; Vliet, P.J. van der; Ceylan, A.C.; Hiz, A.S.; Çavdarli, B.; Gündüz, C.N.S.; Ceylan, G.G.; Nagappa, M.; Tallapaka, K.B.; Govindaraj, P.; Maarel, S.M. van der; Narayanappa, G.; Nandeesh, B.N.; Somwe, S.W.; Bearden, D.R.; Kvalsund, M.P.; Ramdharry, G.M.; Oktay, Y.; Yis, U.; Topaloglu, H.; Sarkozy, A.; Bugiardini, E.; Henning, F.; Wilmshurst, J.M.; Heckmann, J.M.; McFarland, R.; Taylor, R.W.; Smuts, I.; Westhuizen, F.H. van der; Sobreira, C.F.D.; Tomaselli, P.J.; Marques, W.; Bhatia, R.; Dalal, A.; Srivastava, M.V.P.; Yareeda, S.; Nalini, A.; Vishnu, V.Y.; Thangaraj, K.; Straub, V.; Horvath, R.; Chinnery, P.F.; Pitceathly, R.D.S.; Muntoni, F.; Houlden, H.; Vandrovcova, J.; Reilly, M.M.; Hanna, M.G.

doi:doi:10.1093/brain/awad254

Persistent URL of this record https://hdl.handle.net/1887/3731517

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Wilson, L.A.; Macken, W.L.; Perry, L.D.; Record, C.J.; Schon, K.R.; Frezatti, R.S.S.; ... ; Hanna, M.G. (2023)

Neuromuscular disease genetics in under-represented populations: increasing data diversity

Article / Letter to editor

Neuromuscular diseases (NMDs) affect similar to 15 million people globally. In high income settings DNA-based diagnosis has transformed care pathways and led to gene-specific therapies. However, most affected families are in low-to-middle income countries (LMICs) with limited access to DNA-based diagnosis. Most (86%) published genetic data is derived from European ancestry. This marked genetic data inequality hampers understanding of genetic diversity and hinders accurate genetic diagnosis in all income settings. We developed a cloud-based transcontinental partnership to build diverse, deeply-phenotyped and genetically characterized cohorts to improve genetic architecture knowledge, and potentially advance diagnosis and clinical management.We connected 18 centres in Brazil, India, South Africa, Turkey, Zambia, Netherlands and the UK. We co-developed a cloud-based data solution and trained 17 international neurology fellows in clinical genomic data interpretation. Single gene and...Show moreNeuromuscular diseases (NMDs) affect similar to 15 million people globally. In high income settings DNA-based diagnosis has transformed care pathways and led to gene-specific therapies. However, most affected families are in low-to-middle income countries (LMICs) with limited access to DNA-based diagnosis. Most (86%) published genetic data is derived from European ancestry. This marked genetic data inequality hampers understanding of genetic diversity and hinders accurate genetic diagnosis in all income settings. We developed a cloud-based transcontinental partnership to build diverse, deeply-phenotyped and genetically characterized cohorts to improve genetic architecture knowledge, and potentially advance diagnosis and clinical management.We connected 18 centres in Brazil, India, South Africa, Turkey, Zambia, Netherlands and the UK. We co-developed a cloud-based data solution and trained 17 international neurology fellows in clinical genomic data interpretation. Single gene and whole exome data were analysed via a bespoke bioinformatics pipeline and reviewed alongside clinical and phenotypic data in global webinars to inform genetic outcome decisions.We recruited 6001 participants in the first 43 months. Initial genetic analyses 'solved' or 'possibly solved' similar to 56% probands overall. In-depth genetic data review of the four commonest clinical categories (limb girdle muscular dystrophy, inherited peripheral neuropathies, congenital myopathy/muscular dystrophies and Duchenne/Becker muscular dystrophy) delivered a similar to 59% 'solved' and similar to 13% 'possibly solved' outcome. Almost 29% of disease causing variants were novel, increasing diverse pathogenic variant knowledge. Unsolved participants represent a new discovery cohort. The dataset provides a large resource from under-represented populations for genetic and translational research.In conclusion, we established a remote transcontinental partnership to assess genetic architecture of NMDs across diverse populations. It supported DNA-based diagnosis, potentially enabling genetic counselling, care pathways and eligibility for gene-specific trials. Similar virtual partnerships could be adopted by other areas of global genomic neurological practice to reduce genetic data inequality and benefit patients globally.Wilson et al. present the findings of an international partnership established to study genetic causes of neuromuscular diseases in under-represented diverse populations from 12 low-middle income sites. A genetic cause was identified in similar to 55% of cases and similar to 30% of variants were novel, improving understanding of neuromuscular disease genetics.Show less

genomic medicine

inherited neuromuscular disease

capacity building

low-to-middle income country

equality and diversity